Packages

TeamTomo packages are Python code you can depend on for use in your own projects!

input / output

Cryo-EM/ET software often read and write domain specific file formats.

Analysis of cryo-ET data often involves a little scripting, these file input and output packages are there to make that a little easier.

• starfile
• imodmodel
• mdocfile
• emfile
• dynamotable
• mmdf

image analysis

Some of the image processing we do in cryo-EM is domain specific.

These packages for image analysis help you to explore your new ideas without reinventing the wheel. Many are implemented in PyTorch, this means they can run on GPUs and make use of autodiff for parameter optimisation.

• torch-fourier-slice
• torch-cubic-spline-grids
• torch-fourier-rescale
• torch-fourier-shift
• torch-subpixel-crop
• torch-image-lerp
• torch-grid-utils
• torch-fourier-shell-correlation